Top 30 Payroll Software for Small Businesses with Time Tracking Integration

Curated list of the top 30 payroll solutions that include built‑in time‑tracking features, ideal for small businesses looking to streamline payroll, attendance, and invoicing.

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#2 Gusto

All‑in‑one payroll, benefits, and HR platform with Gusto Hours for simple time‑off requests and integrated time‑tracking.

Seamlessly pairs with QuickBooks Online and QuickBooks Time (formerly TSheets) for automatic hours import and payroll processing.

Robust payroll suite with ADP Time & Attendance, offering real‑time clock‑in/out, scheduling, and compliance reporting.

Cloud‑based payroll with integrated Paychex Time for mobile clock‑ins, overtime alerts, and labor cost analytics.

#6 OnPay

User‑friendly payroll with built‑in time‑off tracking, shift scheduling, and automatic sync to popular time‑tracking apps.

HR platform that combines payroll, benefits, and Zenefits Time for punch‑in/out, PTO requests, and compliance tools.

Unified HR, IT, and payroll system with Rippling Time, offering real‑time clock‑in/out, shift management, and automatic payroll runs.

Designed for small businesses and freelancers; integrates with Square Time Tracking for effortless hour imports.

Affordable payroll with optional Patriot Time & Attendance add‑on for simple clock‑in/out and overtime calculations.

#11 Wagepoint

Payroll solution built for small businesses, featuring built‑in time‑tracking, mobile clock‑in, and labor cost reporting.

Part of Zoho One; includes Zoho People Time for attendance, leave management, and automatic payroll generation.

Free accounting suite with paid payroll; integrates with Wave Time Tracking for seamless hour imports.

Intuit‑backed payroll with optional time‑tracking integration via QuickBooks Time for accurate wage calculations.

#15 Paylocity

Modern payroll platform offering Paylocity Time for mobile punch‑in/out, schedule management, and real‑time labor analytics.

Integrated with Xero Accounting; uses Xero Projects & Time Tracking to feed hours directly into payroll runs.

#17 Deputy

All‑in‑one workforce management tool with built‑in time‑tracking, scheduling, and payroll export to most major payroll providers.

Shift scheduling and time‑clock app that can push approved hours straight into QuickBooks Payroll, Gusto, and others.

#19 Clockify

Free time‑tracking platform offering a payroll export feature that integrates with Gusto, QuickBooks, and Paychex.

Mobile time‑tracking app that syncs automatically with QuickBooks Payroll for accurate wage calculations.

#21 BambooHR

HR suite with BambooHR Time Off & Clock‑in/out; integrates with multiple payroll providers for seamless processing.

#22 PaySimple

Payroll and payment processing platform with built‑in time‑tracking for hourly employees and automatic tax filing.

#23 Paycom

Comprehensive HR suite offering Paycom Time for biometric clock‑in/out, schedule adherence, and direct payroll integration.

#24 Paycor

Payroll and HR platform with Paycor Time for mobile attendance, overtime alerts, and real‑time labor cost dashboards.

Standalone payroll service that pairs with QuickBooks Time (TSheets) for effortless hour imports and compliance.

#26 TriNet

Professional employer organization (PEO) offering payroll with integrated time‑tracking and compliance support for small firms.

#27 Breezy HR

Recruiting and HR platform that includes Breezy Time for simple clock‑in/out and can export data to Gusto and ADP.

Cloud accounting with payroll; integrates with Kashoo Time Tracking for automatic hour syncing.

Free payroll software that supports manual time‑sheet entry and can import CSV time‑tracking data from most apps.

#30 Justworks

PEO offering payroll, benefits, and Justworks Time for mobile clock‑ins, PTO tracking, and compliance reporting.

#31 Namely

HR platform with Namely Time for attendance, schedule management, and direct payroll processing.

Lightweight payroll tool with built‑in time‑tracking, designed for freelancers and micro‑businesses.

HR suite featuring Zoho People Time for attendance, leave, and overtime; integrates with Zoho Payroll for end‑to‑end processing.

Mobile app for Paychex Flex that includes time‑tracking, shift scheduling, and instant payroll approvals.

Advanced workforce scheduling with Shiftboard Time; exports approved hours to major payroll systems.