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#2 FreshBooks
Cloud‑based invoicing and accounting tool with native Stripe, PayPal, and ACH integrations, plus time‑tracking and expense management.
Intuit’s flagship accounting suite offers invoicing with built‑in PayPal, Stripe, and Square processing, plus robust reporting.
#4 Xero
Full‑featured accounting platform that lets you send invoices and accept payments via Stripe, PayPal, and major credit‑card gateways.
#5 Zoho Invoice
Lightweight invoicing app with automatic payment reminders and integrated gateways such as PayPal, Stripe, and Razorpay.
#6 Zoho Books
Comprehensive accounting solution that combines invoicing, inventory, and multi‑gateway payments (Stripe, PayPal, Authorize.Net).
#7 Wave
Free accounting and invoicing software for freelancers; includes built‑in credit‑card processing via Stripe and PayPal.
Part of Square’s ecosystem; lets you create professional invoices and accept payments instantly via Square’s own processing.
Simple invoicing tool that leverages PayPal’s global payment network, supporting credit cards, PayPal balance, and Venmo.
#10 Stripe Billing
Developer‑friendly billing platform that creates recurring invoices and accepts payments through Stripe’s extensive gateway network.
#11 Invoice Ninja
Open‑source invoicing platform with built‑in Stripe, PayPal, and Braintree integrations, plus recurring billing and time tracking.
#12 Invoicely
Free and paid tiers for invoicing; supports PayPal, Stripe, and Authorize.Net for seamless online payments.
#13 Harvest
Time‑tracking and invoicing solution that lets you bill clients instantly via Stripe, PayPal, or credit‑card gateways.
Sage’s cloud accounting includes invoicing with integrated payment options like Stripe, PayPal, and Sage Pay.
#15 Kashoo
Simple accounting for small businesses; invoices can be paid online through Stripe, PayPal, or ACH.
Tailored for online sellers; offers invoicing with PayPal, Stripe, and Square payment processing.
#17 PaySimple
All‑in‑one payment processing and invoicing platform, supporting credit‑card, ACH, and e‑check payments.
#18 Bill.com
Automated AP/AR solution that lets you send invoices and receive payments via ACH, credit cards, and PayPal.
#19 Zoho Books
(Listed again for emphasis) Offers multi‑currency invoicing with Stripe, PayPal, and Razorpay, plus automated payment reminders.
#20 Invoice2go
Mobile‑first invoicing app with built‑in payment acceptance via PayPal, Stripe, and Square.
#21 Zoho Invoice
(Listed again for emphasis) Provides customizable invoice templates and integrates with over 30 payment gateways worldwide.