Top 30 Invoice Tracking Software for Small Nonprofits

Cloud‑based accounting with dedicated nonprofit features, customizable invoices, donor tracking, and seamless integration with popular fundraising platforms.

Modern accounting platform offering invoicing, bank reconciliation, and a robust ecosystem of apps; discounts available for registered charities.

User‑friendly invoicing and time‑tracking solution with automated reminders, expense capture, and a simple dashboard suited for small nonprofit teams.

Free up to 5 clients, multi‑currency support, and integration with Zoho Books and CRM—ideal for NGOs that need lightweight invoicing.

Completely free invoicing and accounting software with receipt scanning and bank sync; perfect for cash‑strapped charities.

All‑in‑one nonprofit accounting with fund accounting, donation tracking, and customizable invoice templates designed for mission‑driven orgs.

Scalable cloud accounting with invoicing, cash‑flow forecasting, and a nonprofit pricing tier that includes grant‑tracking add‑ons.

Specialized fund‑accounting system that combines invoicing, grant management, and donor reporting in one compliant package.

Enterprise‑grade nonprofit ERP with robust invoicing, fund accounting, and integrated donor management for growing charities.

Comprehensive cloud ERP offering invoicing, grant tracking, and real‑time financial reporting; tailored pricing for 501(c)(3) organizations.

Open‑source suite with invoicing, automated tax handling, and a dedicated nonprofit module for fund allocation.

Fundraising platform that includes recurring donation invoicing, donor receipts, and integration with QuickBooks and Xero.

Donor‑relationship management with built‑in invoicing, thank‑you letters, and reporting tools focused on donor retention.

CRM for nonprofits that automates invoicing, donation receipts, and syncs with QuickBooks Online for seamless bookkeeping.

All‑in‑one donor management with customizable invoices, pledge tracking, and easy export to accounting software.

Robust donor database with automated invoicing, receipt generation, and integration to QuickBooks and Sage Intacct.

Free, open‑source CRM that includes invoicing, contribution tracking, and grant management; self‑hosted for full control.

Full‑featured accounting suite with multi‑currency invoicing, automated workflows, and a nonprofit discount program.

Open‑source invoicing tool offering unlimited invoices, recurring billing, and a free self‑hosted option for tech‑savvy NGOs.

Simple cloud accounting with invoicing, time tracking, and a free starter plan that includes basic reporting.

Cloud financial management with advanced invoicing, fund accounting, and grant‑tracking modules for midsize nonprofits.

Integrated ERP with invoicing, budgeting, and donor management; offers special pricing for charitable organizations.

Straightforward accounting with invoicing, receipt capture, and a nonprofit discount; ideal for small staff teams.

UK‑focused accounting software with invoicing, expense tracking, and a charitable‑organization pricing tier.

Free invoicing tool that lets nonprofits send professional invoices, accept online payments, and track donation receipts.

Robust subscription and invoicing platform; integrates with donor management systems for recurring donation billing.

Desktop‑based solution with advanced reporting, fund accounting, and high‑volume invoicing for larger charities.

Built on Salesforce, it offers invoicing, grant tracking, and real‑time financial dashboards for mission‑driven orgs.

Flexible ERP with invoicing, budgeting, and grant‑management modules; pricing discounts for 501(c)(3) entities.

Same powerful Xero platform with a special nonprofit pricing tier, offering invoicing, bank feeds, and multi‑entity reporting.

Cloud ERP focused on fund accounting, grant management, and automated invoicing for growing charitable organizations.

Comprehensive suite adding inventory, project billing, and donor‑receipt automation; includes a nonprofit discount.

Retail‑oriented ERP with invoicing, inventory, and donor‑gift fulfillment; useful for nonprofits that run merchandise stores.

Pre‑configured NetSuite solution with invoicing, grant tracking, and donor management; offers a nonprofit pricing model.